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Abstract Marine phytoplankton biomass and chlorophyll-a concentration are often estimated from pigment fluorescence measurements, which have become routine despite known variability in the fluorescent response for a given amount of chlorophyll-a. Here, we present a near-global, monthly climatology of chlorophyll-a fluorescence measurements from profiling floats combined with ocean color satellite estimates of chlorophyll-a concentration to illuminate seasonal biases in the fluorescent response and expand upon previously observed regional patterns in this bias. Global biases span over an order of magnitude, and can vary seasonally by a factor of 10. An independent estimate of chlorophyll-a from light attenuation shows similar global patterns in the chlorophyll-fluorescence bias when compared to biases derived from satellite estimates. Without accounting for these biases, studies or models using fluorescence-estimated chlorophyll-a will inherit the seasonal and regional biases described here. 

Abstract As global ocean monitoring programs and marine carbon dioxide removal methods expand, so does the need for scalable biogeochemical sensors. Currently, pH sensors are widely used to measure the ocean carbonate system on a variety of autonomous platforms. This paper assesses a commercially available optical pH sensor (optode) distributed by PyroScience GmbH for oceanographic applications. Results from this study show that the small, solid‐state pH optode demonstrates a precision of 0.001 pH and relative accuracy of 0.01 pH using an improved calibration routine outlined in the manuscript. A consistent pressure coefficient of 0.029 pH/1000 dbar is observed across multiple pH optodes tested in this study. The response time is investigated for standard and fast‐response versions over a range of temperatures and flow rates. Field deployments include direct comparison to ISFET‐based pH sensor packages for both moored and profiling platforms where the pH optodes experience sensor‐specific drift rates up to 0.006 pH d⁻¹. In its current state, the pH optode potentially offers a viable and scalable option for short‐term field deployments and laboratory mesocosm studies, but not for long term deployments with no possibility for recalibration like on profiling floats. 

Abstract Profiles of oxygen measurements from Argo profiling floats now vastly outnumber shipboard profiles. To correct for drift, float oxygen data are often initially adjusted to deployment casts, ship‐based climatologies, or, recently, measurements of atmospheric oxygen for in situ calibration. Air calibration enables accurate measurements in the upper ocean but may not provide similar accuracy at depth. Using a quality controlled shipboard data set, we find that the entire Argo oxygen data set is offset relative to shipboard measurements (float minus ship) at pressures of 1,450–2,000 db by a median of −1.9 μmol kg⁻¹(mean ± SD of −1.9 ± 3.9, 95% confidence interval around the mean of {−2.2, −1.6}) and air‐calibrated floats are offset by −2.7 μmol kg⁻¹(−3.0 ± 3.4 (CI_95%{−3.7, −2.4}). The difference between float and shipboard oxygen is likely due to offsets in the float oxygen data and not oxygen changes at depth or biases in the shipboard data set. In addition to complicating the calculation of long‐term ocean oxygen changes, these float oxygen offsets impact the adjustment of float nitrate and pH measurements, therefore biasing important derived quantities such as the partial pressure of CO₂(pCO₂) and dissolved inorganic carbon. Correcting floats with air‐calibrated oxygen sensors for the float‐ship oxygen offsets alters float pH by a median of 3.0 mpH (3.1 ± 3.7) and float‐derived surfacepCO₂by −3.2 μatm (−3.2 ± 3.9). This adjustment to floatpCO₂represents half, or more, of the bias in float‐derivedpCO₂reported in studies comparing floatpCO₂to shipboardpCO₂measurements. 

Acidification‐induced changes in neurological function have been documented in several tropical marine fishes. Here, we investigate whether similar patterns of neurological impacts are observed in a temperate Pacific fish that naturally experiences regular and often large shifts in environmental pH/pCO₂. In two laboratory experiments, we tested the effect of acidification, as well as pH/pCO₂variability, on gene expression in the brain tissue of a common temperate kelp forest/estuarine fish,Embiotoca jacksoni. Experiment 1 employed static pH treatments (target pH = 7.85/7.30), while Experiment 2 incorporated two variable treatments that oscillated around corresponding static treatments with the same mean (target pH = 7.85/7.70) in an eight‐day cycle (amplitude ± 0.15). We found that patterns of global gene expression differed across pH level treatments. Additionally, we identified differential expression of specific genes and enrichment of specific gene sets (GSEA) in comparisons of static pH treatments and in comparisons of static and variable pH treatments of the same mean pH. Importantly, we found that pH/pCO₂variability decreased the number of differentially expressed genes detected between high and low pH treatments, and that interindividual variability in gene expression was greater in variable treatments than static treatments. These results provide important confirmation of neurological impacts of acidification in a temperate fish species and, critically, that natural environmental variability may mediate the impacts of ocean acidification. 

Climate change is causing decreases in pH and dissolved oxygen (DO) in coastal ecosystems. Canopy-forming giant kelp can locally increase DO and pH through photosynthesis, with the most pronounced effect expected in surface waters where the bulk of kelp biomass resides. However, limited observations are available from waters in canopies and measurements at depth show limited potential of giant kelp to ameliorate chemical conditions. We quantified spatiotemporal variability of surface biogeochemistry and assessed the role of biological and physical drivers in pH and DO modification at two locations differing in hydrodynamics inside and outside of two kelp forests in Monterey Bay, California in summer 2019. pH, DO, dissolved inorganic carbon (DIC), and temperature were measured at and near the surface, in conjunction with physical parameters (currents and pressure), nutrients, and metrics of phytoplankton and kelp biological processes. DO and pH were highest, with lower DIC, at the surface inside kelp forests. However, differences inside vs. outside of kelp forests were small (DO 6–8%, pH 0.05 higher in kelp). The kelp forest with lower significant wave height and slower currents had greater modification of surface biogeochemistry as indicated by larger diel variation and slightly higher mean DO and pH, despite lower kelp growth rates. Differences between kelp forests and offshore areas were not driven by nutrients or phytoplankton. Although kelp had clear effects on biogeochemistry, which were modulated by hydrodynamics, the small magnitude and spatial extent of the effect limits the potential of kelp forests to mitigate acidification and hypoxia.